Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| LGG | rs1006627 | chr5:94015011 | A/G | 4.32E-5 | 407 | 14.78 | 17.63 | 9.8 | KM Plot |
| LGG | rs10077411 | chr5:156015151 | C/A | 0.000107 | 406 | 15.6 | 15.32 | 10.53 | KM Plot |
| LGG | rs10077734 | chr5:156009720 | G/T | 0.000106 | 407 | 15.6 | 15.3 | 10.53 | KM Plot |
| LGG | rs10084647 | chr22:42788316 | G/T | 6.48E-8 | 402 | 15.23 | 15.47 | 4.4 | KM Plot |
| LGG | rs10086923 | chr8:11842836 | C/G | 4.38E-5 | 407 | 15.47 | 12.77 | 5.28 | KM Plot |
| LGG | rs10087857 | chr8:18267461 | G/C | 8.08E-5 | 404 | 14.9 | 16.3 | 11.82 | KM Plot |
| LGG | rs10103029 | chr8:18267338 | A/G | 8.08E-5 | 404 | 14.9 | 16.3 | 11.82 | KM Plot |
| LGG | rs10103148 | chr8:18267429 | A/C | 8.08E-5 | 404 | 14.9 | 16.3 | 11.82 | KM Plot |
| LGG | rs10115398 | chr9:22770044 | C/T | 4.4E-5 | 407 | 7.8 | 10.63 | 15.97 | KM Plot |
| LGG | rs10116660 | chr9:33805427 | A/G | 2.38E-5 | 406 | 15.55 | 15.7 | 6.13 | KM Plot |
| LGG | rs10122762 | chr9:24382972 | A/C | 0.000112 | 407 | 17.93 | 13.63 | 15.3 | KM Plot |
| LGG | rs10123545 | chr9:33816743 | C/T | 2.36E-5 | 407 | 15.55 | 16 | 6.13 | KM Plot |
| LGG | rs10123713 | chr9:21864552 | C/T | 1.33E-9 | 407 | 17.07 | 11.3 | 15.6 | KM Plot |
| LGG | rs10141377 | chr14:52600092 | G/T | 8.45E-5 | 407 | 15.37 | 12.95 | 14.75 | KM Plot |
| LGG | rs10162452 | chr14:23319172 | A/G | 7.36E-5 | 407 | 16.3 | 14.93 | 11.17 | KM Plot |